PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G157300.1
Common NamePHAVU_006G157300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 761aa    MW: 87890.5 Da    PI: 7.6256
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G157300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.94.6e-2043117189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         +fY +YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+ + +gkw++++++++HnH+l
  Phvul.006G157300.1  43 QFYTSYANRAGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLS--------------SRTGCPAFIRVQINGSGKWVIDHFHKDHNHNL 117
                         6**************************************8765..............699***************************99 PP

2FAR166.85.6e-21197272190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY++YA ++GF vr+ +  +sk++g it+r+fvCskeg++++              +r+gC a l++k++ +gkw v++l+++HnH+l 
  Phvul.006G157300.1 197 QFYHAYAARMGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHP--------------SRVGCGAYLRIKRQPSGKWTVDRLRKDHNHDLD 272
                         6***************************************999..............4899**************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.5E-1643117IPR004330FAR1 DNA binding domain
PfamPF031016.5E-17197272IPR004330FAR1 DNA binding domain
PfamPF105513.2E-27371464IPR018289MULE transposase domain
PROSITE profilePS5096610.348646682IPR007527Zinc finger, SWIM-type
PfamPF044346.4E-9653679IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6657684IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MIVKEHFVGT ELAMNNAIVE EEIDFSCDPY IGLEFDTADE ALQFYTSYAN RAGFKVRIGQ  60
LYRSRTDGSV SSRRFVCSKE GHQLSSRTGC PAFIRVQING SGKWVIDHFH KDHNHNLEIS  120
GENCTPTLQQ KGGTVVSSLT EFTRRPRKKL LEEVNNESSC PFGIIDFKRL RKEELEGQPK  180
TEPYVGQEFS SPNEAYQFYH AYAARMGFGV RIGQLFRSKN DGLITSRRFV CSKEGFQHPS  240
RVGCGAYLRI KRQPSGKWTV DRLRKDHNHD LDSEKEGRAK GLHASNILND DADNGFVNGD  300
LFRIDNYPVP RGGRQNHIRN EWYSILLEYF QARQTEDTGF FYAVEVDNGN CMSIFWADGR  360
SRYSCSQFGD VLVLDTSYRK TVYLVPFATF VGVNHHKQPV LLGCALVADE SEESFTWLFQ  420
TWLRAMSGRQ PLTVIADQDI AVQKAIAKVF PVTYHRFSLW QIKAKEQENM GLMGDGFTKD  480
YEKCVYQSQT VDEFDATWNV LLNKYGLKDN AWLKEMYEKR ASWVPLYLKG TFFAGIPMNE  540
SLDSFFGALL NAQTPLMEFI PRYERGLERR REEERKEDFN TSNFQPILQT KEAVEEQCRR  600
LYTLAVFKVF QKELLQCFSY LGFKIFEEGG LSRYMVRRCG NDMEKHVVTF NASNLSISCS  660
CQMFEYDGVL CRHVLRVFQI LQLREVPSRY ILHRWTRNAE DGVFPDIDSW SSSQELKNLM  720
LWSLRETASK YIDAGATSIE KYKLAYEILR EGGRKLCWHR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147816.10.0hypothetical protein PHAVU_006G157300g
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLV7BRY70.0V7BRY7_PHAVU; Uncharacterized protein
STRINGGLYMA13G28230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7